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See the machines used in the lab below, as well as their installed software.

Tempest 4400 Computing Server

CPU RAM GPU Storage OS
4x AMD Opteron 6376 16C/2.3GHz 256 GB ECC Nvidia Quadro FX3800 1GB 30 TB RAID6 CentOS 7.1

Software

seqkit FASTX toolkit GS de novo assembler (Newbler)
QIIME EMIRGE JAGS Rstudio Server Shiny Server Samtools
Bowtie2 SRA Toolkit repeatmasker USEARCH jellyfish BLAST
brocc bbmap SPAdes Mira Sunbeam hmmer
freebayes

Mac Pro 2013 (1)

CPU RAM GPU Storage Other
Intel Xeon E5 8C 3GHz 64 GB AMD Firepro D500 3GB 1 TB PCie SSD 28 TB External Storage

Software

Mac Pro 2013 (2)

CPU RAM GPU Storage
Intel Xeon E5 8C 3GHz 64 GB AMD Firepro D500 3GB 1 TB PCie SSD

Software

Mac Pro 2012

CPU RAM GPU Storage Other
2x – Intel Xeon 6C 3GHz 64 GB ATI Radeon HD5870 1GB 2TB RAID 0 SSD 12 TB External Storage

Software

  • Bowtie2
  • CLC Genomics Workbench
  • MATLAB 2015a
  • Rstudio
  • Sequin
  • Vironator

Mac Pro 2010

CPU RAM GPU Storage Other
2x – Intel Xeon 6C 2.7GHz 48 B ATI Radeon HD5770 1GB 1TB RAID 0 SSD 4TB External Storage

Software

  • CLC Genomics Workbench
  • Rstudio