![UNC Cortical Thickness logo UNC Cortical Thickness logo](https://www.med.unc.edu/psych/research/niral/wp-content/uploads/sites/770/2018/07/unc-cortical-thickness-logo.gif) |
UNCCorticalThickness |
UNC Cortical Thickness Analysis based on ITK |
![ShapeToolsIcon ShapeToolsIcon](https://www.med.unc.edu/psych/research/niral/wp-content/uploads/sites/770/2018/07/shapetoolsicon.gif) |
ShapeTools (SPHARM shape analysis) |
The SPHARM shape analysis toolset is used for doing local statistical shape analysis. ITK based. |
![FiberTrackingIcon FiberTrackingIcon](https://www.med.unc.edu/psych/research/niral/wp-content/uploads/sites/770/2018/07/fibertrackingicon.gif) |
FiberTracking |
The FT tool is a cross-platform system to explore diffusion tensor images and to reconstruct fiber tracts:
Platform independent
Fiber tracts between ROI
FA and ADC generation |
![DTICheckerIcon DTICheckerIcon](https://www.med.unc.edu/psych/research/niral/wp-content/uploads/sites/770/2018/07/dticheckericon.jpeg) |
DTIChecker |
DTIChecker is a program to check and correct DTI images
Slice artifacts detection
Motion artifacts detection and correction
Average creation |
![MeshValmetIcon MeshValmetIcon](https://www.med.unc.edu/psych/research/niral/wp-content/uploads/sites/770/2018/07/meshvalmeticon.jpeg) |
MeshValmet |
MeshValmet surface difference evaluation tool |
![itkEMSIcon itkEMSIcon](https://www.med.unc.edu/psych/research/niral/wp-content/uploads/sites/770/2018/07/itkemsicon.jpeg) |
itkEMS |
itkEMS is a program to segment brain tissue
Multi channel support
Fast EM segmentation
XML support for parameters |
![FiberViewerIcon FiberViewerIcon](https://www.med.unc.edu/psych/research/niral/wp-content/uploads/sites/770/2018/07/fiberviewericon.gif) |
FiberViewer |
Fiber Viewer is a program to analyze fibers extracted from the Fiber Tracking tool. It provides:
Several methods for clustering
Tools for manipulate fibers
Methods to analyse FA and ADC along fibers |
![ImagineIcon ImagineIcon](https://www.med.unc.edu/psych/research/niral/wp-content/uploads/sites/770/2018/07/imagineicon.jpeg) |
Imagine |
Program which create dynamic pipeline
Up to 20 filters (included affine registration and fluid warping)
Easy to use and to parametrize
Wizard assistant for running pipeline automatically |
![IntensityRescalerIcon IntensityRescalerIcon](https://www.med.unc.edu/psych/research/niral/wp-content/uploads/sites/770/2018/07/intensityrescalericon.jpeg) |
IntensityRescaler |
Program which rescale image in intensity
Intensity rescaling based on segmentation
User can define regions dynamically
Automatic transfert function generation |
![DofviewIcon DofviewIcon](https://www.med.unc.edu/psych/research/niral/wp-content/uploads/sites/770/2018/07/dofviewicon.gif) |
DofView |
DofView is a tool used to analysis Deformation Field created by the WarpTool or AtlasBuilder software.
Several measurement: Jacobian, Divergence …
Convert Linux/Solaris DoF to Windows (Imagine) DOF
3D display of the deformation field |
![Byu2voxIcon Byu2voxIcon](https://www.med.unc.edu/psych/research/niral/wp-content/uploads/sites/770/2018/07/byu2vox.gif) |
Byu2vox |
Byu2Vox is a program that convert a BYU surface to a voxel volume.
Specification of the bounding box
Multi-images processing (batch mode) |
![IrisIcon IrisIcon](https://www.med.unc.edu/psych/research/niral/wp-content/uploads/sites/770/2018/07/irisicon.jpeg) |
Iris |
IRIS is intended help doctors to create 3D models of structures within the brain:
Displays the data in 4 windows.
Build a 3D model of a structure from any volumetric data set
Drawing tools |
![SnapIcon SnapIcon](https://www.med.unc.edu/psych/research/niral/wp-content/uploads/sites/770/2018/07/snapicon.jpeg) |
Snap |
Snake Automatic Partitioning:
Region-probability snake (competition snake).
Propagation snake stopping at region discontinuities.
Region of interest painting. |
![ValmetIcon ValmetIcon](https://www.med.unc.edu/psych/research/niral/wp-content/uploads/sites/770/2018/07/valmeticon.jpeg) |
Valmet |
Valmet is a tool to improve segmentations. Valmet used several algorithms to compare segmentations in 2D and 3D:
Complex algortihms implemented
Dynamic 2D and 3D vizualisation
Differences color display along the surface |
![ImconvertIcon ImconvertIcon](https://www.med.unc.edu/psych/research/niral/wp-content/uploads/sites/770/2018/07/imconverticon.jpeg) |
Imconvert |
Program which convert .gipl .hdr .raw . v0 .mha images
Select input/output type
Select patient orientation
Graphic user interface (very usefull under Windows) |